S Corp Tax Planning & Entity Structuring

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S Corp Tax Planning & Entity Structuring

For a profitable owner, the right entity can save thousands a year. A wrong setup, or a good one run badly, can draw IRS attention.

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  • Laura Dohanes, CPA · CA License #129889
  • 3,000+ IRS & state audits represented
  • 20+ years with small businesses
  • Virtual, nationwide
In short

An S corp election can lower self-employment tax for profitable owners if the salary, payroll and books are set up correctly. We help you decide whether an S corp, LLC, partnership or C corp fits, set a reasonable salary you can support with documentation, and adjust the setup as your profits change.

Who it's for

Who this is for

  • LLC owners wondering whether it's time to elect S corp status.
  • S corp owners who aren't sure their salary, payroll or health insurance is set up correctly.
  • Owners with more than one business or entity, partnerships, and husband-and-wife LLCs.
  • Owners planning to raise money or sell, for whom a C corporation may be worth a look.
Schedule Your Free Tax Strategy Session
Laura Dohanes, CPA
Compare

LLC vs. S corp vs. C corp

An LLC is a legal entity created under state law. An S corporation is a tax election that an LLC or a corporation can make. So the useful question is usually how your profit should be taxed.

LLC (default tax treatment)S corporationC corporation
How profit is taxedPasses through to your personal returnPasses through to your personal returnTaxed at the corporate rate (21%), then again when paid out as dividends
Self-employment taxGenerally on all of an active owner's profitPayroll taxes on your salary; remaining profit not subject to self-employment taxPayroll taxes on salary only
Owner salary required?NoYes, a reasonable salary if you work in the businessYes, if you work in the business
QBI deductionMay qualifyMay qualifyNo
Best fit (generally)Early-stage or lower-profit businessesConsistently profitable owners who work in the businessReinvesting most profit, raising capital, or planning a stock sale
Laura Dohanes, CPA, walking a business owner through entity options
The break-even

When does an S corp make sense?

It's a break-even calculation. The self-employment tax you save on profit above your salary has to be more than the extra costs: payroll, a separate business return (Form 1120-S) and state fees. In California, for example, S corporations pay a 1.5% franchise tax with an $800 minimum. Your salary, your state and your QBI deduction all affect the result. We work through real numbers in at what profit does an S corp make sense?

Reasonable compensation: how we set your salary

If you work in your S corp, the IRS expects you to pay yourself a reasonable salary before you take distributions. The IRS has no approved ratio, and the popular "60/40 rule" isn't in the tax code. We set your salary based on your role, hours, responsibilities and market pay, write down how we got there, and review it as profits change. A salary that's too low invites IRS scrutiny. One that's too high costs extra payroll tax and can reduce your QBI deduction.

Read more: S corp reasonable compensation · salary and the QBI sweet spot · extra profit? salary first.

What you get

What's included

Entity review and recommendation

Which entity fits your profit, plans and state, with the numbers to back the recommendation.

Election and timing

Filing Form 2553 on time, or requesting late-election relief if a deadline was missed.

Reasonable salary and payroll

A documented salary analysis, and help coordinating payroll setup.

Owner benefits done right

Accountable plans for home office and mileage, and health insurance for owners handled correctly.

Multi-entity structure

Holding companies, partnerships and QBI aggregation for owners of more than one business.

State tax and PTET

Pass-through entity tax elections and state filing strategy.

Fix-ups

Common S corp mistakes we fix

  • No payroll at all, or a salary far too low for the work you do.
  • Personal expenses paid from the business instead of through an accountable plan. The fix.
  • Family health insurance handled the wrong way. The trap.
  • Rental property held inside an S corp. Why that's usually a problem.
  • A husband-and-wife LLC filing the wrong return. What to file.
  • Forming the LLC in Wyoming expecting it to protect you from the IRS. The Wyoming LLC myth.
Tax law update

What changed in 2025 and 2026

QBI deduction now permanent

The 20% deduction for pass-through owners no longer ends after 2025, which changes the S corp math.

SALT cap raised, PTET intact

The individual SALT cap is $40,000 for 2025 and phases down at higher incomes. Entity-level PTET elections are still available.

QSBS expanded

The Section 1202 (QSBS) gain exclusion was expanded for qualifying C corporation stock issued after July 4, 2025. That matters if you're considering a C corp ahead of a future sale.

$11.3M+in client tax savings through 2023
7,500+entrepreneurs worked with
3,000+IRS & state audits represented
3×+clients' savings vs. their fees

Firm figures as reported by My CPA Pro.

Client results

Hear from our clients

★★★★★

"Working with My CPA Pro has been a great decision for my business. I never realized how much I was overpaying in taxes. They do a fantastic job communicating and helping me navigate the tax code."

Jeff TrappGoogle review
FAQ

Frequently asked questions

At what profit does an S corp election make sense?

There isn't one number. It depends on a reasonable salary for your role, your state's fees and your QBI deduction. We run the break-even with your numbers. See the S corp profit threshold.

What's the difference between an LLC and an S corp?

An LLC is a legal entity, and an S corp is a tax election. An LLC can elect to be taxed as an S corp. The LLC provides the legal protection, and the election determines how the profit is taxed.

How much should I pay myself from my S corp?

A reasonable salary for the work you do, based on your role, hours and market pay. There's no fixed percentage. We document the analysis in case the IRS asks.

Is the 60/40 salary rule real?

No. It's a rule of thumb, and the IRS doesn't use it. The IRS looks at what you do and what similar work pays.

Can I elect S corp status late?

Form 2553 is generally due within two months and 15 days after the start of the tax year the election should take effect. If you missed it, the IRS offers late-election relief in many cases.

What does it cost to run an S corp?

Payroll costs, a separate business return (Form 1120-S) and state fees. California, for example, charges a 1.5% franchise tax with an $800 minimum. We include these costs in the break-even.

Should I be a C corporation instead?

Sometimes. It usually comes up when you're reinvesting most of your profit, raising outside capital, or planning a stock sale that may qualify for the QSBS exclusion. Owner-operators who take their profit out usually do better with a pass-through.

Does an S corp still make sense with the QBI deduction?

Often, yes, but your salary affects both. A higher salary saves less self-employment tax and can reduce QBI, while a lower one invites scrutiny. Setting the salary is part of the plan.

S Corp Tax Planning & Entity Structuring
Free strategy call

Not sure your entity is set up right?

Bring your last return and your profit numbers, and we'll tell you what we see.

Schedule Your Free Tax Strategy Session
Laura Dohanes, CPA
Written and reviewed by Laura Dohanes, CPA, founder of My CPA Pro, P.C. California CPA License #129889 (verify). Laura has more than 20 years of experience advising small businesses as a tax strategist and fractional CFO, and she has represented more than 3,000 clients in federal and state tax audits. About Laura. Last updated October 2026.

This page is general information, not tax, legal or financial advice for your situation. Tax rules change and depend on your facts, so talk with a qualified professional before acting.